Computational Regulatory Genomics

Publications (2006)

Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots

J. Lee,  J. Colinas,  J. Wang,  D. Mace,  Uwe Ohler,  P. Benfey 
Proc. Natl. Acad. Sci. U.S.A. 2006;   PubMed Central   DOI   PubMed  

Optimized mixed Markov models for motif identification

W. Huang,  D. Umbach,  Uwe Ohler,  L. Li 
BMC Bioinformatics 2006;   PubMed Central   DOI   PubMed  

Quantification of transcription factor expression from Arabidopsis images

D. Mace,  J. Lee,  R. Twigg,  J. Colinas,  P. Benfey,  Uwe Ohler 
Bioinformatics 2006;   DOI   PubMed  

Informative priors based on transcription factor structural class improve de novo motif discovery

L. Narlikar,  R. Gordan,  Uwe Ohler,  A. Hartemink 
Bioinformatics 2006;   DOI   PubMed  

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment

V. Bajic,  M. Brent,  R. Brown,  A. Frankish,  J. Harrow,  Uwe Ohler,  V. Solovyev,  S. Tan 
Genome Biol. 2006;   PubMed Central   DOI   PubMed  

Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction

Uwe Ohler 
Nucleic Acids Res. 2006;   PubMed Central   DOI   PubMed  
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