MUMMIE Examples

Data supporting the manuscript:

Majoros WH, Lekprasert P, Mukherjee N, Corcoran DL, Skalsky RL, Ohler U (2012) Micro-RNA Target Site Identification by Integrating Sequence and Binding Information. Submitted.

Model files:

mirna.hmm : miRNA target prediction in PAR-CLIP
bulgemodels.tgz miRNA bulge model

Input data:

utrs.tgz Human lymphoblastoid 3' UTRs - Ago2 PAR-CLIP

Outputs:

targets.tgz miRNA target predictions
bulgetargets.tgz miRNA bulge predictions

Validation Scripts:

scripts.tgz Validation scripts

Please see the microMUMMIE page for information on predicting miRNA target sites with MUMMIE and PAR-CLIP data.

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Example Data