Publications
Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis
Reddington, J. P., Garfield, D. A., Sigalova, O. M., Aslihan Karabacak, Marco-Ferreres, R., Girardot, C., Viales, R. R., Degner, J. F., Uwe Ohler, Furlong, E. E. M.Dev Cell 2020;
Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling
Aslihan Karabacak, Antje Hirsekorn, Wurmus, Ricardo, Yusuf, Dilmurat, Uwe OhlerGenome Biology 2019;
DOI
PubMed
Determinants of promoter and enhancer transcription directionality in metazoans.
Mahmoud Ibrahim, Aslihan Karabacak, Glahs, Alexander, Kolundzic, Ena, Antje Hirsekorn, Carda, Alexa, Tursun, Baris, Zinzen, Robert P, Scott Allen Lacadie, Uwe OhlerNature communications 2018;
DOI
PubMed
McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes
Dina Hafez, Aslihan Karabacak, Krueger, Sabrina, Hwang, Yih-Chii, Wang, Li-San, Zinzen, Robert P., Uwe OhlerGenome Biology 2017;
DOI