Computational Regulatory Genomics

Publications (2019)

Deciphering human ribonucleoprotein regulatory networks

Neelanjan Mukherjee Hans-Hermann Wessels Svetlana Lebedeva,  Marcin Sajek,  Mahsa Ghanbari,  Aitor Garzia,  Alina-Cristina Munteanu,  Dilmurat Yusuf,  Thalia Farazi,  Jessica Hoell,  Kemal Akat,  Altuna Akalin,  Thomas Tuschl,  Uwe Ohler 
Nucleic Acids Research 2019;   DOI  

Global identification of functional microRNA-mRNA interactions in Drosophila

Hans-Hermann Wessels Svetlana Lebedeva Antje Hirsekorn,  Ricardo Wurmus,  Altuna Akalin Neelanjan Mukherjee Uwe Ohler 
Nature Communications 2019;   DOI  

Purification of cross-linked RNA-protein complexes by phenol-toluol extraction

Erika Vieira-Vieira,  Timon Hick,  Hans-Hermann Wessels,  Davide Figini,  Rebecca Moschall,  Jan Medenbach,  Uwe Ohler,  Sander Granneman,  Matthias Selbach,  Benedikt Beckmann 
Nature Communications 2019;   DOI  

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling

Aslihan Karabacak Antje Hirsekorn,  Ricardo Wurmus,  Dilmurat Yusuf,  Uwe Ohler 
Genome Biology 2019;   DOI   PubMed  
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