• Software
• RSVP
• PIPmiR
• NASTIseq
• S-Peaker
• Supplementary Material
• Installation
• Orthologous Enhancers
• McEnhancer
• FootprintMixture
• Reproducible footprinting
• cERMIT
• SSMART
• Cseq-Simulator
• PARalyzer
• mEAT
• JAMM Peak Finder
• MUMMIE
• microMUMMIE
• Intro to Multivariate Markov Modeling
• microMUMMIE Drosophila
• TargetThermo
• RiboTaper
• DeepRiPe
• WaRSwap
• Root_imaging_pipeline
• PARpipe
• RNAmetabolism
• Data

Software

List of all Software from Lab

Prediction of coding and non-coding genes:

RSVP

PIPmiR

NASTISeq

Promoter and enhancer analysis:

S-Peaker

Orthologous Enhancers

TF target site identification:

DNase footprint detection

ChIP/CLIP analysis:

cERMIT

PARalyzer

JAMM

miRNA target prediction:

MUMMIE

TargetThermo

Ribosome profiling:

RiboTaper

Regulatory network topology:

WaRSwap

Gene expression imaging:

Root_imaging_pipeline