Computational Regulatory Genomics

Software


List of all Software from Lab

 

Prediction of coding and non-coding genes:

RSVP

PIPmiR

NASTISeq

 

Promoter and enhancer analysis:

S-Peaker

Orthologous Enhancers

 

TF target site identification:

DNase footprint detection

 

ChIP/CLIP analysis:

cERMIT

PARalyzer

JAMM

 

miRNA target prediction:

MUMMIE

TargetThermo

 

Ribosome profiling:

RiboTaper

 

Regulatory network topology:

WaRSwap

 

Gene expression imaging:

Root_imaging_pipeline

 



aa: