Sequence-structure motif identification for RNA-binding proteins
Munteanu A., Mukherjee N., Ohler U.(2018): SSMART: sequence-structure motif identification for RNA-binding proteins, Bioinformatics.
SSMART performs de novo motif discovery on high-throughput RNA-binding protein data, predicting sequence and structure binding motifs of RBPs. We used SSMART to examine a range of publicly available biological datasets and to compare binding specificities derived from in vivo and in vitro experiments.
|SSMART1.2||Jul 2017||new post-processing procedure (clustering evolved k-mer motifs); added vizualisation for the similarity between evolved k-mer motifs; added option for filetype of output plots.|
|SSMART1.1||Feb 2017||bug fixes in pre-processing step.|