Computational Regulatory Genomics

Publications

Transcriptional control of tissue formation throughout root development

Moreno-Risueno, M. A.,  Sozzani, R.,  Gurkan Yardimci,  Petricka, J. J.,  Vernoux, T.,  Blilou, I.,  Alonso, J.,  Winter, C. M.,  Uwe Ohler,  Scheres, B.,  Benfey, P. N. 
Science 2015;   DOI  

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection

Gurkan Yardimci,  Frank, Christopher L,  Crawford, Gregory E,  Uwe Ohler 
Nucleic acids research 2014;   DOI   PubMed  

Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity

Tewari, A. K.,  Gurkan Yardimci,  Shibata, Y.,  Sheffield, N. C.,  Song, L.,  Taylor, B. S.,  Georgiev, S. G.,  Coetzee, G. A.,  Uwe Ohler,  Furey, T. S.,  Crawford, G. E.,  Febbo, P. G. 
Genome Biol. 2012;   PubMed Central   DOI   PubMed  

Predicting cell-type-specific gene expression from regions of open chromatin

Natarajan, A.,  Gurkan Yardimci,  Sheffield, N. C.,  Crawford, G. E.,  Uwe Ohler 
Genome Res. 2012;   PubMed Central   DOI   PubMed  
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