Computational Regulatory Genomics

Publications

Determinants of promoter and enhancer transcription directionality in metazoans.

Mahmoud Ibrahim Aslihan Karabacak,  Glahs, Alexander,  Kolundzic, Ena,  Antje Hirsekorn,  Carda, Alexa,  Tursun, Baris,  Zinzen, Robert P,  Scott Allen Lacadie Uwe Ohler 
Nature communications 2018;   DOI   PubMed  

A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells

Velasco, Silvia,  Mahmoud Ibrahim,  Kakumanu, Akshay,  Garipler, Gorkem,  Aydin, Begum,  Al-Sayegh, Mohamed Ahmed,  Antje Hirsekorn,  Abdul-Rahman, Farah,  Satija, Rahul,  Uwe Ohler,  Mahony, Shaun,  Mazzoni, Esteban O 
Cell Stem Cell 2017;   DOI   PubMed  

Divergent Transcription and Epigenetic Directionality of Human Promoters

Scott Allen Lacadie Mahmoud Ibrahim Sucheta Arun Gokhale Uwe Ohler 
FEBS J. 2016;   DOI   PubMed  

JAMM: a peak finder for joint analysis of NGS replicates

Mahmoud Ibrahim Scott Allen Lacadie Uwe Ohler 
Bioinformatics 2015;   DOI   PubMed  

Human Promoters Are Intrinsically Directional

Duttke, S. H.,  Scott Allen Lacadie Mahmoud Ibrahim,  Glass, C. K.,  Corcoran, D. L.,  Benner, C.,  Heinz, S.,  Kadonaga, J. T.,  Uwe Ohler 
Molecular Cell 2015;   DOI   PubMed  

Perspectives on Unidirectional versus Divergent Transcription

Duttke, S. H.,  Scott Allen Lacadie Mahmoud Ibrahim,  Glass, C. K.,  Corcoran, D. L.,  Benner, C.,  Heinz, S.,  Kadonaga, J. T.,  Uwe Ohler 
Mol. Cell 2015;   DOI   PubMed  
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