Publications (2011)
A stele-enriched gene regulatory network in the Arabidopsis root
S. Brady, L. Zhang, M. Megraw, N. Martinez, E. Jiang, C. Yi, W. Liu, A. Zeng, M. Taylor-Teeples, D. Kim, S. Ahnert, Uwe Ohler, D. Ware, A. Walhout, P. BenfeyMol. Syst. Biol. 2011;
PubMed Central
DOI
PubMed
Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level
E. Rach, D. Winter, A. Benjamin, D. Corcoran, T. Ni, J. Zhu, Uwe OhlerPLoS Genet. 2011;
PubMed Central
DOI
PubMed
Assessing the utility of thermodynamic features for microRNA target prediction under relaxed seed and no conservation requirements
P. Lekprasert, M. Mayhew, Uwe OhlerPLoS ONE 2011;
PubMed Central
DOI
PubMed
Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability
Neelanjan Mukherjee, D. Corcoran, J. Nusbaum, D. Reid, S. Georgiev, M. Hafner, M. Ascano, T. Tuschl, Uwe Ohler, J. KeeneMol. Cell 2011;
PubMed Central
DOI
PubMed
Automatic annotation of spatial expression patterns via sparse Bayesian factor models
I. Pruteanu-Malinici, D. Mace, Uwe OhlerPLoS Comput. Biol. 2011;
PubMed Central
DOI
PubMed
PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data
D. Corcoran, S. Georgiev, Neelanjan Mukherjee, E. Gottwein, R. Skalsky, J. Keene, Uwe OhlerGenome Biol. 2011;
PubMed Central
DOI
PubMed
Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines
E. Gottwein, D. Corcoran, Neelanjan Mukherjee, R. Skalsky, M. Hafner, J. Nusbaum, P. Shamulailatpam, C. Love, S. Dave, T. Tuschl, Uwe Ohler, B. CullenCell Host Microbe 2011;
PubMed Central
DOI
PubMed