Computational Regulatory Genomics

Publications (2012)

High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis

N. Breakfield,  D. Corcoran,  J. Petricka,  J. Shen,  J. Sae-Seaw,  I. Rubio-Somoza,  D. Weigel,  Uwe Ohler,  P. Benfey 
Genome Res. 2012;   PubMed Central   DOI   PubMed  

The viral and cellular microRNA targetome in lymphoblastoid cell lines

R. Skalsky,  D. Corcoran,  E. Gottwein,  C. Frank,  D. Kang,  M. Hafner,  J. Nusbaum,  R. Feederle,  H. Delecluse,  M. Luftig,  T. Tuschl,  Uwe Ohler,  B. Cullen 
PLoS Pathog. 2012;   PubMed Central   DOI   PubMed  

The protein expression landscape of the Arabidopsis root

J. Petricka,  M. Schauer,  M. Megraw,  N. Breakfield,  J. Thompson,  S. Georgiev,  E. Soderblom,  Uwe Ohler,  M. Moseley,  U. Grossniklaus,  P. Benfey 
Proc. Natl. Acad. Sci. U.S.A. 2012;   PubMed Central   DOI   PubMed  

Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach

J. Ding,  D. Li,  Uwe Ohler,  J. Guan,  S. Zhou 
BMC Genomics 2012;   PubMed Central   DOI   PubMed  

Translocation of sickle cell erythrocyte microRNAs into Plasmodium falciparum inhibits parasite translation and contributes to malaria resistance

G. LaMonte,  N. Philip,  J. Reardon,  J. Lacsina,  W. Majoros,  L. Chapman,  C. Thornburg,  M. Telen,  Uwe Ohler,  C. Nicchitta,  T. Haystead,  J. Chi 
Cell Host Microbe 2012;   PubMed Central   DOI   PubMed  

Predicting cell-type-specific gene expression from regions of open chromatin

A. Natarajan,  Gurkan Yardimci,  N. Sheffield,  G. Crawford,  Uwe Ohler 
Genome Res. 2012;   PubMed Central   DOI   PubMed  

The Drosophila Translational Control Element (TCE) is required for high-level transcription of many genes that are specifically expressed in testes

R. Katzenberger,  E. Rach,  A. Anderson,  Uwe Ohler,  D. Wassarman 
PLoS ONE 2012;   PubMed Central   DOI   PubMed  

A microfluidic device and computational platform for high-throughput live imaging of gene expression

W. Busch,  B. Moore,  B. Martsberger,  D. Mace,  R. Twigg,  J. Jung,  I. Pruteanu-Malinici,  S. Kennedy,  G. Fricke,  R. Clark,  Uwe Ohler,  P. Benfey 
Nat. Methods 2012;   PubMed Central   DOI   PubMed  

Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity

A. Tewari,  Gurkan Yardimci,  Y. Shibata,  N. Sheffield,  L. Song,  B. Taylor,  S. Georgiev,  G. Coetzee,  Uwe Ohler,  T. Furey,  G. Crawford,  P. Febbo 
Genome Biol. 2012;   PubMed Central   DOI   PubMed  

FMRP targets distinct mRNA sequence elements to regulate protein expression

M. Ascano,  Neelanjan Mukherjee,  P. Bandaru,  J. Miller,  J. Nusbaum,  D. Corcoran,  C. Langlois,  M. Munschauer,  S. Dewell,  M. Hafner,  Z. Williams,  Uwe Ohler,  T. Tuschl 
Nature 2012;   PubMed Central   DOI   PubMed  
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