Publications (2014)
Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection
Gurkan Yardimci, Christopher Frank, Gregory Crawford, Uwe OhlerNucleic acids research 2014;
DOI
PubMed
Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures
Taj Morton, Jalean Petricka, David Corcoran, Song Li, Cara Winter, Alexa Carda, Philip Benfey, Uwe Ohler, Molly MegrawThe Plant Cell 2014;
DOI
PubMed
Global target mRNA specification and regulation by the RNA-binding protein ZFP36
Neelanjan Mukherjee, Nicholas Charles Jacobs, M. Hafner, E. Kennington, J. Nusbaum, T. Tuschl, P. Blackshear, Uwe OhlerGenome Biol. 2014;
DOI
PubMed
Improved transcript isoform discovery using ORF graphs
W. Majoros, N. Lebeck, Uwe Ohler, S. LiBioinformatics 2014;
DOI
PubMed
Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets
T. Farazi, C. Leonhardt, Neelanjan Mukherjee, A. Mihailovic, S. Li, K. Max, C. Meyer, M. Yamaji, P. Cekan, Nicholas Charles Jacobs, S. Gerstberger, C. Bognanni, E. Larsson, Uwe Ohler, T. TuschlRNA 2014;
DOI
PubMed
COUGER-co-factors associated with uniquely-bound genomic regions
Alina-Cristina Munteanu, Uwe Ohler, R. GordanNucleic Acids Res. 2014;
DOI
PubMed