Computational Regulatory Genomics

OHLER LABORATORY

Publications (2019)

A Conserved Noncoding Locus Regulates Random Monoallelic Xist Expression Across a Topological Boundary

Rafael Galupa, Elphege Nora, Rebecca Hunt, Christel Picard, Chris Gard, Joke Bemmel, Nicolas Servant, Yinxiu Zhan, Fatima Marjou, Colin Johanneau, Patricia Diabangouaya, Agnes Saux, Sonia Lameiras, Juliana Fonseca, Friedemann Loos, Joost Gribnau, Sylvain Baulande, Uwe Ohler, Luca Giorgetti, Edith Heard
Molecular Cell 2019;

DOI

PubMed

Deep neural networks for interpreting RNA binding protein target preferences

Mahsa Ghanbari, Uwe Ohler
bioRxiv 2019;

DOI

The Translational Landscape of the Human Heart

S. Heesch, F. Witte, V. Schneider-Lunitz, J.F. Schulz, E. Adami, A.B. Faber, M. Kirchner, H. Maatz, S. Blachut, C.L. S, M. K, C.L. Worth, S. Schafer, Lorenzo Calviello, R. Merriott, G. Patone, O. Hummel, E. Wyler, B. Obermayer, M.B. Mucke, E.L. Lindberg, F. Trnka, S. Memczak, M. Schilling, L.E. Felkin, P.J.R. Barton, N.M. Quaife, K. Vanezis, S. Diecke, M. Mukai, N. Mah, S.J. Oh, A. Kurtz, C. Schramm, D. Schwinge, M. Sebode, M. Harakalova, F.W. Asselbergs, A. Vink, R.A. deWeger
Cell 2019;

DOI

Towards a deeper annotation of human lncRNAs.

Michal Szczesniak, E. Wanowska, Neelanjan Mukherjee, Uwe Ohler, Izabela Makalowska
Biochimica et biophysica acta. Gene regulatory mechanisms 2019;

DOI

PubMed

Global identification of functional microRNA-mRNA interactions in Drosophila

Hans-Hermann Wessels, Svetlana Lebedeva, Antje Hirsekorn, Ricardo Wurmus, Altuna Akalin, Neelanjan Mukherjee, Uwe Ohler
Nature Communications 2019;

DOI

Purification of cross-linked RNA-protein complexes by phenol-toluol extraction

Erika Vieira-Vieira, Timon Hick, Hans-Hermann Wessels, Davide Figini, Rebecca Moschall, Jan Medenbach, Uwe Ohler, Sander Granneman, Matthias Selbach, Benedikt Beckmann
Nature Communications 2019;

DOI

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling

Aslihan Karabacak, Antje Hirsekorn, Ricardo Wurmus, Dilmurat Yusuf, Uwe Ohler
Genome Biology 2019;

DOI

PubMed