Publications
Quantification of translation uncovers the functions of the alternative transcriptome
Lorenzo Calviello, Antje Hirsekorn, Uwe OhlerNat Struct Mol Biol 2020;
DOI
PubMed
Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling
Aslihan Karabacak, Antje Hirsekorn, Wurmus, Ricardo, Yusuf, Dilmurat, Uwe OhlerGenome Biology 2019;
DOI
PubMed
Global identification of functional microRNA-mRNA interactions in Drosophila
Hans-Hermann Wessels, Svetlana Lebedeva, Antje Hirsekorn, Wurmus, Ricardo, Akalin, Altuna, Neelanjan Mukherjee, Uwe OhlerNature Communications 2019;
DOI
Determinants of promoter and enhancer transcription directionality in metazoans.
Mahmoud Ibrahim, Aslihan Karabacak, Glahs, Alexander, Kolundzic, Ena, Antje Hirsekorn, Carda, Alexa, Tursun, Baris, Zinzen, Robert P, Scott Allen Lacadie, Uwe OhlerNature communications 2018;
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PubMed
Integrative classification of human coding and noncoding genes through RNA metabolism profiles
Neelanjan Mukherjee, Lorenzo Calviello, Antje Hirsekorn, de Pretis, S., Pelizzola, M., Uwe OhlerNat. Struct. Mol. Biol. 2017;
DOI
PubMed
A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells
Velasco, Silvia, Mahmoud Ibrahim, Kakumanu, Akshay, Garipler, Gorkem, Aydin, Begum, Al-Sayegh, Mohamed Ahmed, Antje Hirsekorn, Abdul-Rahman, Farah, Satija, Rahul, Uwe Ohler, Mahony, Shaun, Mazzoni, Esteban OCell Stem Cell 2017;
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PubMed
Detecting actively translated open reading frames in ribosome profiling data
Lorenzo Calviello, Neelanjan Mukherjee, Wyler, Emanuel, Zauber, Henrik, Antje Hirsekorn, Selbach, Matthias, Landthaler, Markus, Obermayer, Benedikt, Uwe OhlerNature Methods 2016;
DOI
PubMed
Identifying RBP Targets with RIP-seq
Hans-Hermann Wessels, Antje Hirsekorn, Uwe Ohler, Neelanjan MukherjeeMethods Mol. Biol. 2016;
DOI
PubMed