Computational Regulatory Genomics

Publications

Purification of cross-linked RNA-protein complexes by phenol-toluol extraction

Vieira-Vieira, Erika C. Urdanetaand Carlos H.,  Hick, Timon,  Hans-Hermann Wessels,  Figini, Davide,  Moschall, Rebecca,  Medenbach, Jan,  Uwe Ohler,  Granneman, Sander,  Selbach, Matthias,  Beckmann, Benedikt M. 
Nature Communications 2019;   DOI  

Global identification of functional microRNA-mRNA interactions in Drosophila

Hans-Hermann Wessels Svetlana Lebedeva Antje Hirsekorn,  Wurmus, Ricardo,  Akalin, Altuna,  Neelanjan Mukherjee Uwe Ohler 
Nature Communications 2019;   DOI  

Deciphering human ribonucleoprotein regulatory networks

Neelanjan Mukherjee Hans-Hermann Wessels Svetlana Lebedeva,  Sajek, Marcin,  Mahsa Ghanbari,  Garzia, Aitor,  Alina-Cristina Munteanu,  Yusuf, Dilmurat,  Farazi, Thalia,  Hoell, Jessica I.,  Akat, Kemal M.,  Akalin, Altuna,  Tuschl, Thomas,  Uwe Ohler 
Nucleic Acids Research 2018;   DOI  

omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data

Drewe-Boss, Philipp,  Hans-Hermann Wessels Uwe Ohler 
Genome Biology 2018;   DOI  

Identifying RBP Targets with RIP-seq

Hans-Hermann Wessels Antje Hirsekorn Uwe Ohler Neelanjan Mukherjee 
Methods Mol. Biol. 2016;   DOI   PubMed  

The mRNA-bound proteome of the early fly embryo

Hans-Hermann Wessels,  Imami, K.,  Baltz, A. G.,  Kolinksi, M.,  Beldovskaya, M.,  Selbach, M.,  Small, S.,  Uwe Ohler,  Landthaler, M. 
Genome Res. 2016;   DOI  

Regnase-1 and Roquin Regulate a Common Element in Inflammatory mRNAs by Spatiotemporally Distinct Mechanisms

Mino, T.,  Murakawa, Y.,  Fukao, A.,  Vandenbon, A.,  Hans-Hermann Wessels,  Ori, D.,  Uehata, T.,  Tartey, S.,  Akira, S.,  Suzuki, Y.,  Vinuesa, C. G.,  Uwe Ohler,  Standley, D. M.,  Landthaler, M.,  Fujiwara, T.,  Takeuchi, O. 
Cell 2015;   DOI   PubMed  
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