Publications (2013)
Using machine learning to identify disease-relevant regulatory RNAs
Uwe OhlerProc. Natl. Acad. Sci. U.S.A. 2013;
PubMed Central
DOI
PubMed
MicroRNA target site identification by integrating sequence and binding information
W. Majoros, P. Lekprasert, Neelanjan Mukherjee, R. Skalsky, D. Corcoran, B. Cullen, Uwe OhlerNat. Methods 2013;
PubMed Central
DOI
PubMed
Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation
Dina Hafez, T. Ni, S. Mukherjee, J. Zhu, Uwe OhlerBioinformatics 2013;
PubMed Central
DOI
PubMed
Automated annotation of gene expression image sequences via non-parametric factor analysis and conditional random fields
I. Pruteanu-Malinici, W. Majoros, Uwe OhlerBioinformatics 2013;
PubMed Central
DOI
PubMed
Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data
S. Li, L. Liberman, Neelanjan Mukherjee, P. Benfey, Uwe OhlerPubMed Central
DOI
PubMed
Fine time course expression analysis identifies cascades of activation and repression and maps a putative regulator of mammalian sex determination
S. Munger, A. Natarajan, L. Looger, Uwe Ohler, B. CapelPLoS Genet. 2013;
PubMed Central
DOI
PubMed
Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits
M. Megraw, S. Mukherjee, Uwe OhlerGenome Biol. 2013;
DOI
PubMed
Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy
T. Ni, Y. Yang, Dina Hafez, W. Yang, K. Kiesewetter, Y. Wakabayashi, Uwe Ohler, W. Peng, J. ZhuBMC Genomics 2013;
PubMed Central
DOI
PubMed